error in reading fcs
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yang.chen • 0
@yangchen-9081
Last seen 8.4 years ago
European Union

Hello, 

I meet the following error when reading some customized FCS.

Error in .readFCSdataRaw(con, dattype, count = as.integer(offsets["dataend"] -  : object 'splitInt' not found

I checked the code and found "splitInt" is not initialized when  "transformation" %in% names(x) && x[["transformation"]] == "custom" (line 546 of https://github.com/Bioconductor-mirror/flowCore/blob/809692c9f2337a25bcc0adf444f536c2f1317fd6/R/IO.R#L547)

Do you think it can be fixed by adding splitInt <- TRUE or FALSE in the condition?

Thanks,

Best/Yang

 

 

 

 

 

 

flowCore • 960 views
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Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 2.5 years ago
(Private Address)

It's been fixed in flowCore 1.36.1. See C: read.FCS error on FCS import

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yang.chen • 0
@yangchen-9081
Last seen 8.4 years ago
European Union

Thanks a lot Mike!

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