Question: Converting annotation from UCSC to Ensembl
0
4.0 years ago by
AB70
United States
AB70 wrote:

Hi everybody,

I am doing differential gene expression analysis on 22 samples from 3 batches. I have the count matrix generated using summarizeOverlaps() function. The reference genome is mm10 from UCSC. I need the annotation in Ensemble to compare my results with the results from another person using the same dataset. Is there anyway I can use R to find the corresponding Ensemble IDs ?

Thanks

annotation ensembl ucsc • 1.6k views
modified 4.0 years ago by James W. MacDonald52k • written 4.0 years ago by AB70
Answer: Converting annotation from UCSC to Ensembl
1
4.0 years ago by
United States
James W. MacDonald52k wrote:

You would use the org.Mm.eg.db package and the select() function. See the AnnotationDbi vignette for examples.