Search
News: Ensembl 83 is out!
0
gravatar for amonida
23 months ago by
amonida10
United Kingdom
amonida10 wrote:

We are pleased to announce that the latest Ensembl update (e!83) has
been released:

http://www.ensembl.org/

If you are using biomaRt, you can change your host to access our most recent data (With R 2.2 and Bioconductor version 3.1):

ensembl_mart_83 <- useEnsembl(biomart=“ensembl")

  • Ensembl Genes 83
    • Retirement of the "flagged variants" (http://www.ensembl.org/Help/Glossary?id=533)
    • Renamed "Phase" attribute to "start phase" and added new "end phase" attribute to structure and sequence sections.
    • Human assembly updated from GRCh38.p3 to GRCh38.p5
  • Ensembl Variation 83
    • Retirement of the genotype and strain data. This will result in the removal of the "Strain Variants", "Strain - Other Variants (Indels, Multiple Nucleotide Polymorphisms)" and "Compare Strain genotypes" attribute sections.
    • Retirement of the "flagged variants" (http://www.ensembl.org/Help/Glossary?id=533)
    • Human assembly updated from GRCh38.p3 to GRCh38.p5
  • Ensembl Regulation 83
  • Vega 63
    • Renamed "Phase" attribute to "start phase" and added new "end phase" attribute to structure and sequence sections.
    • Human assembly updated from GRCh38.p3 to GRCh38.p5

 

A complete list of the changes in release 83 can be found at
http://www.ensembl.org/info/website/news.html

For the latest news from the Ensembl project visit our blog at
http://www.ensembl.info

The release 83 blog post can be viewed here:
http://www.ensembl.info/blog/2015/12/08/ensembl-83-has-been-released/

The e83 webinar is planned for Wednesday 16th Dec at 16:00 GMT, please
register using the following URL. Registration is free.
http://www.ebi.ac.uk/training/events/2015/ensembl-release-83-webinar

Best regards,
Amonida
--
Amonida Zadissa, PhD
Ensembl Production
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
UK

ADD COMMENTlink written 23 months ago by amonida10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 194 users visited in the last hour