Parsing raw Axiom .CEL files using affy2sv R package
1
0
Entering edit mode
@vinicius-henrique-da-silva-6713
Last seen 10 months ago
Brazil

I would like to use the 'Ax2APT' function from 'affy2sv' package in Horse Axiom files. That´s how my code look like:

library(affy2sv)
Ax2APT( 
  cel.files="/home/user/rawData/Axiom_Horse/Axiom_MNEc670",
  output.path="/home/user/penncnvData", 
  analysis.path="/home/user/libraryData",
  xml.dqc=" Axiom_MNEc670.r1.apt-geno-qc.AxiomQC1.xml", 
  xml.config.1="Axiom_MNEc670_96orMore_Step1.r1.apt-probeset-genotype.AxiomGT1.xml", 
  xml.config.2="Axiom_MNEc670_96orMore_Step2.r1.apt-probeset-genotype.AxiomGT1.xml")

However, I am getting this error:

Error in file(file, ifelse(append, "a", "w")) :
  cannot open the connection
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
  cannot open file 'tmp.ax.apt.75854750511.1': Permission denied

The folder exist and I have permission to write and read there. Some idea?

 

affy2sv apt-get • 1.2k views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 56 minutes ago
United States

That's not a Bioconductor package, so you need to ask the author directly.

ADD COMMENT

Login before adding your answer.

Traffic: 760 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6