Question: Error in Using Uniport.ws library
0
gravatar for beingseema03
3.9 years ago by
beingseema0310
India
beingseema0310 wrote:

Hi all,

I am using uniport.ws library for retrieving uniport web services of Human dataset. But when i run the function

up = UniProt.ws(taxId = 9606) then it gives this error

Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") :
  cannot open URL 'http://www.UniProt.org/UniProt/?query=organism:9606&format=tab&columns=id': HTTP status was '301 Moved Permanently'.

Even after setting internet to true this function does not work. Please provide any help.

uniprot.ws bioconductor • 778 views
ADD COMMENTlink modified 3.9 years ago by Martin Morgan ♦♦ 24k • written 3.9 years ago by beingseema0310
Answer: Error in Using Uniport.ws library
0
gravatar for Martin Morgan
3.9 years ago by
Martin Morgan ♦♦ 24k
United States
Martin Morgan ♦♦ 24k wrote:

The URL should not have capitalization; this is fixed in version 2.10.2, which should be available via biocLite() at this time tomorrow. A temporary solution is to use

fixInNamespace(".getUniprots", "UniProt.ws")

and write the URL with all lower-case letters.

ADD COMMENTlink written 3.9 years ago by Martin Morgan ♦♦ 24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 219 users visited in the last hour