Unable to load qvalue package
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lgvazdela • 0
@lgvazdela-9440
Last seen 8.2 years ago

Hi,

I downloaded the qvalue package from Bioconductor (qvalue version 2.2.0), but  I get the following error:

library(qvalue)

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  there is no package called ‘stringi’
In addition: Warning messages:
1: replacing previous import by ‘grid::arrow’ when loading ‘qvalue’ 
2: replacing previous import by ‘grid::unit’ when loading ‘qvalue’ 
Error: package or namespace load failed for ‘qvalue’

Here is the sessionInfo:

sessionInfo()

R version 3.2.2 (2015-08-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8 x64 (build 9200)

locale:
[1] LC_COLLATE=Spanish_Mexico.1252  LC_CTYPE=Spanish_Mexico.1252    LC_MONETARY=Spanish_Mexico.1252
[4] LC_NUMERIC=C                    LC_TIME=Spanish_Mexico.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] colorspace_1.2-6     scales_0.3.0         plyr_1.8.3           BiocInstaller_1.20.1
 [5] tools_3.2.2          gtable_0.1.2         Rcpp_0.12.2          ggplot2_2.0.0       
 [9] grid_3.2.2           munsell_0.4.2


I notice that in the session info output says that is running under Windows 8, but actually I'm using Windows 10.

Thanks

qvalue • 2.5k views
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Did you try install.packages("stringi") and then load the qvalue package? Does it fail to install (if so, what's the message).

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I installed the stringi package  and now I can use the function. However,  I get the following warnings:

library(qvalue)
Warning messages:
1: replacing previous import by ‘grid::arrow’ when loading ‘qvalue’ 
2: replacing previous import by ‘grid::unit’ when loading ‘qvalue’

Do you think this can affect the performance of qvalue?

Thank you very much for your response.

Luis

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The message will not affect the performance of the qvalue package ... It has something to do with an update from another package (And we are pushing a new version soon that fixes the message.).

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Thank you so much. I will be on the alert to the next version.

Happy new year

Luis

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