Can OmicCircos handle chicken ChIA-PET interactome?
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Gary ▴ 20
@gary-7967
Last seen 2.6 years ago

Hi,

I wonder OmicCircos can deal with the chicken genome (galGal4) with 15,932 fragmented scaffolds? Furthermore, whether OmicCircos can build a genome-wide chromatin interactome identified by ChIA-PET (Chromatin Interaction Analysis with Paired-End Tag Sequencing) on the chicken genome (e.g. fig1)? Many thanks.

Best,

Gary

UCSC Genome Browser chicken galGal4 scaffolds

http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=466328921_qqAqS1M9CJJCxCQs6wapfUjR09AG&chromInfoPage=

fig1: Genome-wide CTCF-mediated chromatin interactome in Handoko, et al. 2011. CTCF-mediated functional chromatin interactome in pluripotent cells. Nature Genetics. 

 

 

 

OmicCircos chicken • 869 views
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