Problems using the savR package
0
0
Entering edit mode
@merellastefania-8220
Last seen 7.9 years ago
Italy

Dear all,

I am using the savR package to create plots and tables regarding the quality feature of my Illumina RUNs. In particular the sequencing is performed with MiSeq sequencer.

I have been able to use the package for a lot of RUNS but when performing the last one I received this error:

library(savR)
Loading required package: ggplot2
run_folder="150902_M03773_0005_000000000-AG95J"
fc=savR(run_folder)
tile_metrics=tileMetrics(fc)
Error in tileMetrics(fc) : trying to get slot "data" from an object of a basic class ("NULL") with no slots

Any help is appreciate.

Thanks,

Stefania

sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS release 6.7 (Final)

 

 

savR illumina • 921 views
ADD COMMENT

Login before adding your answer.

Traffic: 1057 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6