Gene Ontolology and Annotation
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msp.cse • 0
@mspcse-7975
Last seen 5.7 years ago
United States

How to create the following files using SQL queries in R from GO.db, org.Sc.sgd.db, and org.Hs.eg.db, respectively.

gene_ontology.obo

gene_association.sgd

gene_association.goa_human

 

Please help me.

Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db • 779 views
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Diego Diez ▴ 760
@diego-diez-4520
Last seen 10 months ago
Japan

It seems you can get those files from geneontology directly:

http://www.geneontology.org/ontology/gene_ontology.obo

http://www.geneontology.org/gene-associations/

Is there a particular reason why you want to create them using SQL queries from GO.db, org.Sc.sgd.db, and org.Hs.eg.db?

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