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Question: Gene Ontolology and Annotation
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gravatar for msp.cse
2.9 years ago by
msp.cse0
United States
msp.cse0 wrote:

How to create the following files using SQL queries in R from GO.db, org.Sc.sgd.db, and org.Hs.eg.db, respectively.

gene_ontology.obo

gene_association.sgd

gene_association.goa_human

 

Please help me.

ADD COMMENTlink modified 2.9 years ago by Diego Diez730 • written 2.9 years ago by msp.cse0
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gravatar for Diego Diez
2.9 years ago by
Diego Diez730
Japan
Diego Diez730 wrote:

It seems you can get those files from geneontology directly:

http://www.geneontology.org/ontology/gene_ontology.obo

http://www.geneontology.org/gene-associations/

Is there a particular reason why you want to create them using SQL queries from GO.db, org.Sc.sgd.db, and org.Hs.eg.db?

ADD COMMENTlink written 2.9 years ago by Diego Diez730
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