Question: getting closer on YEAST 2.0 annotation...
14.7 years ago by
Jacob Michaelson • 320
Jacob Michaelson • 320 wrote:
I've gotten closer to getting a working yeast annotation package for the Affymetrix YEAST 2.0 chip. I was able to procure the proper ORF ids and the probe ids, and from there I used yeastPkgBuilder within AnnBuilder to create a package. It ran for a few hours and terminated with the following error: Error in readLines(con) : cannot open the connection From what I can tell, it got most (if not all) of the probes processed. I tried installing the package from the shell using R CMD INSTALL YEAST2 YEAST2 is the name I gave to the package. I get the error: WARNING: invalid package 'YEAST2' ERROR: no packages specified I know it's there, it just doesn't think the directory is a valid package (dir includes R, man, data subdirectories). I also tired installing via the Mac OS X GUI, which also failed. There was also an XML file made, which seems to contain all the proper annotation. Is there any way to create an annotation package from this XML file? Why even make the XML file? (Just curious). Thanks in advance, Jake Michaelson
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