QuasR: spliced and unspliced alignment
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@nadia_boufaied-9356
Last seen 5.4 years ago
Canada

Hi,

When using qAlign in QuasR package and set parameter to splicedAlignment=TRUE, what happen with the continuous (unspliced) reads. Are they completely removed from the alignment?

Thank you

Nadia

quasr alignment • 779 views
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@hotz-hans-rudolf-3951
Last seen 11 months ago
Switzerland

Hi Nadia

No, you get those reads as well.

When you use splicedAlignment=TRUE, you should get more or less the same number of 'unspliced' alignments (as if you use splicedAlignment=FALSE) plus the extra 'spliced' alignments.

 

Regards, Hans-Rudolf

 

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