QuasR: spliced and unspliced alignment
0
Entering edit mode
@nadia_boufaied-9356
Last seen 4.8 years ago
Canada

Hi,

When using qAlign in QuasR package and set parameter to splicedAlignment=TRUE, what happen with the continuous (unspliced) reads. Are they completely removed from the alignment?

Thank you

Nadia

quasr alignment • 666 views
ADD COMMENTlink
0
Entering edit mode
@hotz-hans-rudolf-3951
Last seen 4 months ago
Switzerland

Hi Nadia

No, you get those reads as well.

When you use splicedAlignment=TRUE, you should get more or less the same number of 'unspliced' alignments (as if you use splicedAlignment=FALSE) plus the extra 'spliced' alignments.

 

Regards, Hans-Rudolf

 

ADD COMMENTlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 154 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.4