Hi, I have got the following error using plier on R version 2.0. eset<-justPlier() Quantile normalizing...Error: recursive default argument reference Error in indexProbes(abatch, "both") : Unable to find the argument "object" in selecting a method for function "indexProbes" > -- ______________________________________________ Anthony Bosco - PhD Student Institute for Child Health Research (Company Limited by Guarantee ACN 009 278 755) Subiaco, Western Australia, 6008 Ph 61 8 9489 , Fax 61 8 9489 7700 email anthonyb@ichr.uwa.edu.au

Hi Anthony, It's different from justRMA() You need to give it an AffyBatch object to normalise: raw <- ReadAffy() eset <- justPlier(raw) (I'll update the function so it works the same way as justRMA() with no parameters, when I get a moment :-) ). Cheers, Crispin -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of Anthony Bosco Sent: 17 February 2005 05:46 To: bioconductor@stat.math.ethz.ch Subject: [BioC] PLIER Error Hi, I have got the following error using plier on R version 2.0. eset<-justPlier() Quantile normalizing...Error: recursive default argument reference Error in indexProbes(abatch, "both") : Unable to find the argument "object" in selecting a method for function "indexProbes" > -- ______________________________________________ Anthony Bosco - PhD Student Institute for Child Health Research (Company Limited by Guarantee ACN 009 278 755) Subiaco, Western Australia, 6008 Ph 61 8 9489 , Fax 61 8 9489 7700 email anthonyb@ichr.uwa.edu.au _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}