Question: (Closed) QC criteria for transcriptome analysis
0
gravatar for Sushant Pawar
3.9 years ago by
Nashik
Sushant Pawar0 wrote:

Hello all,

     I have a doubt about the QC criteria for Transcriptome analysis. If we run plugin of ampliseqRNA analysis, What should be the acceptance and rejection criteria from output stats like "Mapped reads", "Valid reads","Target Detected",">=QV 20 Bases,"Bases"  for sample.This output is generate by Torrent suite version 4.6.

 

qc transcriptome • 481 views
ADD COMMENTlink written 3.9 years ago by Sushant Pawar0

Hello Sushant Pawar!

We believe that this post does not fit the main topic of this site.

This question does not seem related to Bioconductor software.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 3.9 years ago by Sean Davis21k

Ok Sean i can understand that this is not directly to connected to bioconductor  , but it is primary step for our Bioconductor analysis. 

Thank you for your reply ,i will post this question on another site.

ADD REPLYlink written 3.9 years ago by Sushant Pawar0
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 225 users visited in the last hour