I am trying to perform analyses based on the Gene Barcode 3.0 statistical software. I have installed all the relevant packages but having an issue running the frma function since I cannot seem to download the "mogene.2.0.stfrmavecs" package. (My affymetrix data is Mouse gene 2.0. ST).
> celFiles <- list.celfiles("~/Downloads/CEL_files")
> affyRaw <- read.celfiles(celFiles)
Loading required package: pd.mogene.2.0.st
Loading required package: RSQLite
Loading required package: DBI
Platform design info loaded.
Reading in : JS_A1_1.CEL
Reading in : JS_B6_14.CEL
Reading in : JS_D3_27.CEL
Reading in : JS_E8_40.CEL
Error in frma(affyRaw) :
mogene.2.0.stfrmavecs package must be installed first
In addition: Warning message:
In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘mogene.2.0.stfrmavecs’
And when I do try installing this package, I get the following error:
Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.2 (2015-08-14).
Installing package(s) ‘mogene.2.0.stfrmavecs’
package ‘mogene.2.0.stfrmavecs’ is not available (for R version 3.2.2)
Is this package not available at all or not available for the R version 3.2.2? What version of R may I install the package?
Any help would be appreciated. Thank you in advance!