Problem while installing genomicfeatures package.
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vinod.acear ▴ 50
@vinodacear-8884
Last seen 3.6 years ago
India

Hi i am getting following mentioned problem while installing 'genomicfeatures' package on linux mint. I searched internet about problem but didnt worked for me. sessoninfo is given

Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite' ERROR: lazy loading failed for package ‘GenomicFeatures’

 

sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8        LC_COLLATE=en_IN.UTF-8     LC_MONETARY=en_IN.UTF-8   
 [6] LC_MESSAGES=en_IN.UTF-8    LC_PAPER=en_IN.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggplot2_1.0.0        RSQLite_1.0.0        DBI_0.3.1            BiocInstaller_1.12.1

loaded via a namespace (and not attached):
 [1] colorspace_1.2-6 digest_0.6.9     grid_3.0.2       gtable_0.1.2     magrittr_1.5     MASS_7.3-29      munsell_0.4.2    plyr_1.8.1      
 [9] proto_0.3-10     Rcpp_0.12.3      reshape2_1.4.1   scales_0.3.0     stringi_1.0-1    stringr_1.0.0    tools_3.0.2     

 

genomicfeatures • 822 views
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You have a pretty old version of R there.  Can you try updating to a newer version?  I don't think the mix of RSQLite, Bioconductor and that version of R is compatible.

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