Using custom expected R to estimate LRR with GWASTools
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@vinicius-henrique-da-silva-6713
Last seen 10 months ago
Brazil

It is possible to use the functions BAFfromGenotypes and/or getLogRRatio while setting custom Rexpected values?
I am assuming the model at page 10 of the manual (http://bioconductor.org/packages/release/bioc/vignettes/GWASTools/inst/doc/Affymetrix.pdf).

The only option that I found was to change the estimation from plate to the entire study. 

gwastools • 532 views
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@stephanie-m-gogarten-5121
Last seen 11 weeks ago
University of Washington

No, that option is not available.

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