Question: Using custom expected R to estimate LRR with GWASTools
0
gravatar for Vinicius Henrique da Silva
3.6 years ago by
Brazil

It is possible to use the functions BAFfromGenotypes and/or getLogRRatio while setting custom Rexpected values?
I am assuming the model at page 10 of the manual (http://bioconductor.org/packages/release/bioc/vignettes/GWASTools/inst/doc/Affymetrix.pdf).

The only option that I found was to change the estimation from plate to the entire study. 

gwastools • 480 views
ADD COMMENTlink modified 3.6 years ago by Stephanie M. Gogarten670 • written 3.6 years ago by Vinicius Henrique da Silva40
Answer: Using custom expected R to estimate LRR with GWASTools
0
gravatar for Stephanie M. Gogarten
3.6 years ago by
University of Washington
Stephanie M. Gogarten670 wrote:

No, that option is not available.

ADD COMMENTlink written 3.6 years ago by Stephanie M. Gogarten670
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