Question: installation GEOquery package
0
gravatar for fariba.rafiei
3.1 years ago by
fariba.rafiei0 wrote:

Dear all!

Greetings!

For whole entire day, I was trying to download GEOquery package in R & Bioconductor (ubuntu) but unfortunately Icouldn't. Everytime, there are different error messages. You can see the highlighted commands that I used and part of error messages. So, Could anyone help me to fix this annoying problems? I'll highly appreciate you if you can fix this problem.

Regards

F.R.

 

 

> biocLite("GEOquery")

 

0.tar.gz'

Content type 'application/x-gzip' length 13630252 bytes (13.0 Mb)

opened URL

==================================================

downloaded 13.0 Mb

 

* installing *source* package ‘RCurl’ ...

checking for curl-config... no

Cannot find curl-config

ERROR: configuration failed for package ‘RCurl’

* removing ‘/home/fariba/R/x86_64-pc-linux-gnu-library/3.0/RCurl’

ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘GEOquery’

* removing ‘/home/fariba/R/x86_64-pc-linux-gnu-library/3.0/GEOquery’

 

The downloaded source packages are in

‘/tmp/RtmpN02eVM/downloaded_packages’

Warning: unable to access index for repository http://cran.utstat.utoronto.ca/src/contrib

Warning messages:

1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :

installation of package ‘RCurl’ had non-zero exit status

2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :

installation of package ‘GEOquery’ had non-zero exit status

>

 

> library(GEOquery)

Error in library(GEOquery) : there is no package called ‘GEOquery’

 

bioconductor • 1.0k views
ADD COMMENTlink modified 3.1 years ago by Dan Tenenbaum8.2k • written 3.1 years ago by fariba.rafiei0
Answer: installation GEOquery package
0
gravatar for Dan Tenenbaum
3.1 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:

Try:

sudo apt-get libcurl4-openssl-dev 

Then try reinstlaling GEOquery.

ADD COMMENTlink written 3.1 years ago by Dan Tenenbaum8.2k
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