Warning message in Seqplots
Entering edit mode
yu.fu • 0
Last seen 5.2 years ago

I got some warning messages when running Seqplots, and can not use the "web interface"

SeqPlots ready, type "run()" to start web interface (GUI) or "?getPlotSetArray" for console mode help.
Warning messages:
1: replacing previous import by ‘grid::arrow’ when loading ‘seqplots’
2: replacing previous import by ‘grid::unit’ when loading ‘seqplots’

Any ideas how to fix it? Thank you very much!

The sessioninfo is as follow:

R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.3 LTS

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=de_DE.UTF-8   
 [6] LC_MESSAGES=en_US.UTF-8    LC_PAPER=de_DE.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C            

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] BSgenome.Athaliana.TAIR.TAIR9_1.3.1000 BSgenome_1.38.0                        rtracklayer_1.30.1                    
 [4] Biostrings_2.38.3                      XVector_0.10.0                         GenomicRanges_1.22.3                  
 [7] GenomeInfoDb_1.6.2                     IRanges_2.4.6                          S4Vectors_0.8.7                       
[10] BiocGenerics_0.16.1                    seqplots_1.8.0                        

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.3                RColorBrewer_1.1-2         futile.logger_1.4.1        plyr_1.8.3                 class_7.3-14              
 [6] bitops_1.0-6               futile.options_1.0.0       tools_3.2.3                zlibbioc_1.16.0            digest_0.6.9              
[11] jsonlite_0.9.19            RSQLite_1.0.0              gtable_0.1.2               shiny_0.13.0               DBI_0.3.1                 
[16] parallel_3.2.3             spam_1.3-0                 gridExtra_2.0.0            stringr_1.0.0              maps_3.0.2                
[21] fields_8.3-6               htmlwidgets_0.5            DT_0.1                     grid_3.2.3                 Biobase_2.30.0            
[26] R6_2.1.2                   plotrix_3.6-1              XML_3.98-1.3               BiocParallel_1.4.3         reshape2_1.4.1            
[31] ggplot2_2.0.0              lambda.r_1.1.7             magrittr_1.5               MASS_7.3-45                Rsamtools_1.22.0          
[36] scales_0.3.0               htmltools_0.3              GenomicAlignments_1.6.3    SummarizedExperiment_1.0.2 xtable_1.8-0              
[41] mime_0.4                   colorspace_1.2-6           httpuv_1.3.3               stringi_1.0-1              RCurl_1.95-4.7            
[46] munsell_0.4.2              kohonen_2.0.19             Cairo_1.5-9      

seqplots • 641 views
Entering edit mode
ps562 • 0
Last seen 5.2 years ago

Thanks for reporting this issues. It seems that all of them are solved in current development version. You can install  it by using following commands in R:

if (!require("devtools")) install.packages("devtools")
devtools::install_github('przemol/seqplots', build_vignettes=FALSE)

Please let me know if you still experience the problems in after installing newest version.

BTW, the issue is duplicate of https://github.com/Przemol/seqplots/issues/9



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