Question: (Closed) version 2.10.2
gravatar for DHS
3.8 years ago by
DHS0 wrote:

Dear BioConductor Community, I am using the version 2.10.2 to retrieve features for my protein hitlists. I am particularly interested in the SUBCELLULAR LOCATION information.

While the info is available on (e.g.: I seem to be unable to retrieve any SUBCELLULAR LOCATION information via the package, I only get NA as results while other cols return the correct infos:

res <- select(up, "P35579", "REACTOME", "UNIPROTKB")
Getting mapping data for P35579 ... and REACTOME_ID
'select()' returned 1:many mapping between keys and columns
> res
1    P35579 R-HSA-5627117
2    P35579 R-HSA-5625900
3    P35579 R-HSA-5625740
4    P35579 R-HSA-5627123
5    P35579  R-HSA-416572
6    P35579 R-HSA-3928663
7    P35579 R-HSA-2029482


res <- select(up, "P35579", "SUBCELLULAR-LOCATIONS", "UNIPROTKB")
Getting extra data for P35579 NA NA etc
'select()' returned 1:1 mapping between keys and columns
> res
1    P35579                  <NA>

So I wonder whether the SUBCELLULAR LOCATION info is actually updated in the package or whether this supporting data can be accessed in any other way?






ADD COMMENTlink written 3.8 years ago by DHS0

Hello d.siepe!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.


ADD REPLYlink written 3.8 years ago by James W. MacDonald52k
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