Dear BioConductor Community, I am using the UniProt.ws version 2.10.2 to retrieve features for my protein hitlists. I am particularly interested in the SUBCELLULAR LOCATION information.
While the info is available on uniprot.org (e.g.: http://www.uniprot.org/uniprot/P35579#subcellular_location) I seem to be unable to retrieve any SUBCELLULAR LOCATION information via the UniProt.ws package, I only get NA as results while other cols return the correct infos:
res <- select(up, "P35579", "REACTOME", "UNIPROTKB")
Getting mapping data for P35579 ... and REACTOME_ID
'select()' returned 1:many mapping between keys and columns
> res
UNIPROTKB REACTOME
1 P35579 R-HSA-5627117
2 P35579 R-HSA-5625900
3 P35579 R-HSA-5625740
4 P35579 R-HSA-5627123
5 P35579 R-HSA-416572
6 P35579 R-HSA-3928663
7 P35579 R-HSA-2029482
but
res <- select(up, "P35579", "SUBCELLULAR-LOCATIONS", "UNIPROTKB")
Getting extra data for P35579 NA NA etc
'select()' returned 1:1 mapping between keys and columns
> res
UNIPROTKB SUBCELLULAR-LOCATIONS
1 P35579 <NA>
So I wonder whether the SUBCELLULAR LOCATION info is actually updated in the package or whether this supporting data can be accessed in any other way?
Best,
D