Hi, has anyone worked with data from the new Illumina Epic dataset? It has over 850K vs 450K. I tried using methyAnalysis but getting errors because there does not seem to be any annotation packages like the IlluminaHumanMethylation450k.db.
This is my first time doing methylation analysis; so I'm stuck. Does anyone know what other packages/technique I can use to get around this annotation problem? I do not have the IDAT files but outputs from genomestudio as provided by our vendor. I could possibly get the IDAT files though if it helps.
Thank you in advance.