FlowViz package question
1
0
Entering edit mode
Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 2.5 years ago
(Private Address)

On 03/03/2016 02:32 AM, Christian Oertlin wrote:

Dear Mike,

I am trying to visualise data using the flowViz package but I am running into issues I cannot seem to solve using google… 

The Issue arises when I would like to create plots.

myData

head(flowData[[1]])
       FSC-A FSC-H    FSC-W    SSC-A SSC-H    SSC-W  PE-A  APC-A Time
[1,] 71998.5 61966 76146.49 25612.20 25523 65765.04 27.00 141.90    0
[2,] 78648.0 66429 77590.73 33729.30 32281 68476.30 93.60 221.02    0
[3,] 53946.0 44799 78917.05 33765.30 33071 66911.88 31.50 394.74    0
[4,] 95034.0 80042 77811.01 36692.10 36058 66688.48 26.10  17.20    0
[5,] 62160.5 52083 78216.51 26566.65 26695 65220.90 28.35 552.98    0
[6,] 81112.0 68700 77376.36 49473.90 47196 68699.07 57.15 496.22    0

code:
plot(flowData[[1]]) ### Should create a plot with all possible combinations

Error in grid.Call.graphics(L_downviewport, name$name, strict) : 
  Viewport 'plot_01.panel.1.1.off.vp' was not found

Also:
xyplot(`SSC-A`~`FSC-A`,flowData[[1]])

creates a graph with following message:
Error using packet 1 Missing value where TRUE/FALSE needed

Have you encountered these issues before and what would be a work around?

I get these issues using both Mac and Windows, session info below.

Kind regards,
Christian Oertlin
flowviz flowcytometry • 1.2k views
ADD COMMENT
0
Entering edit mode
Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 2.5 years ago
(Private Address)
Hey Mike,

I found the problem, I suppose. I tried a different dataset for which everything works now. There must be some kind of data corruption. 

Thanks
Chris
ADD COMMENT

Login before adding your answer.

Traffic: 776 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6