I am looking to use customproDB with my bam files, vcf and gene fusion data to generate custom peptide sequences. I am particularly interested inbcr gene fusion events. I was going through the documentation and was not quite sure how to represent my gene fusions in the bed file so that they will be picked up by the software based on the categories in the JunctionType labels. How does the software realize a given line in the bed file is part of a fusion event.

Thanks