i am very new to bioconductor, and now i am planning to analyis the DNA methylation analysis using TCGAbiolinks.
i preferred the links below and copy & pasted it , but the R script does not work well and the error comes out.
if you know the solution, would you tell me , thanks in advance !
TCGAvisualize_meanMethylation(coad.met, groupCol = "methylation_subtype", subgroupCol = "hypermutated", shapes=NULL, print.pvalue=TRUE, ylab="DNA methylation", xlab=NULL, title="Mean DNA methylation", labels=NULL, group.legend = "Groups", subgroup.legend = "hypermutated", filename = "coad_mean.png")
Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) :
subscript contains invalid names