Dear Bioconductor Community,
I performed signed co-expression network analysis using WGCNA and identified key modules and hub genes within. I want to tease apart nearest neighbors of a given hub gene and perform GO and pathway analyses on those. I tried using RBGL package to convert igraph to graph object and used kCliques; edge betweeness and community related functions from RBGL and igraph packages but all I get is one cluster including all genes within a module.
Is there a package in Bioconductor (or CRAN) that does that (in lines of k-spanning tree or SNN).
Thanks in advance for your help.