Can anyone please tell me what are the main differences between Deseq and Deseq2? I guess both work on same statistical test (Negative Binomial distribution).
And for my samples using DESeq package I have used function "nbinomTest" to test for differences between the base means for two conditions. How can I do the same using DESeq2 package. I haven't found any function for this.
An elevator speech on the difference still would be useful.
The section of the vignette is pretty brief.
Oops left off the link: