Is it possible to generate the html QC tables with a call to ChIPQCreport(), that does not include the commentary and interpretation narrative?  

thanks

Ashley

hi Ashley,

Sorry i missed this post due to the tag -- chipq rather than chipqc.

You cant produce a report like you suggest yet but you can produce all the plots and place into a rMarkdown. for more information on just plotting and reporting metrics you can see our other material.

https://bioconductor.org/help/course-materials/2014/BioC2014/Bioc2014_ChIPQC_Practical.pdf

or here under ChIPQC section.

http://mrccsc.github.io/ChIPseq_short/ 

In the future i will add more options in reporting as i implement a tracktables HTML version of report in ChIPQC/

best,

tom