Plot with two separated groups of genes.
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Adam • 0
@adam-10025
Last seen 5.1 years ago
Poland

Hello,

I'm trying to make a plot with two visible separated groups of genes. I have data frame: colums:

gene:ID   A   B   C   D   E   F

where a-f are intensities of expression.

Heatmap shows nice difference between a-c and d-f expression, now I'd like to visualie this by scatterplot3d or cloud3d?

Could you give me some hints?

 

Regards,

Adam

scatter-plot clustering • 623 views
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@mrodriguesfernanda-9433
Last seen 5.1 years ago
University of Illinois, Urbana-Champaign

Not sure of what your data looks like, and how you're analyzing it, but the plotPCA() function from the affycoretools R package may allow you to do that. You can also produce a 3d plot with this function.

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