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Question: Plot with two separated groups of genes.
0
gravatar for Adam
19 months ago by
Adam0
Poland
Adam0 wrote:

Hello,

I'm trying to make a plot with two visible separated groups of genes. I have data frame: colums:

gene:ID   A   B   C   D   E   F

where a-f are intensities of expression.

Heatmap shows nice difference between a-c and d-f expression, now I'd like to visualie this by scatterplot3d or cloud3d?

Could you give me some hints?

 

Regards,

Adam

ADD COMMENTlink modified 19 months ago by mrodrigues.fernanda10 • written 19 months ago by Adam0
0
gravatar for mrodrigues.fernanda
19 months ago by
University of Illinois, Urbana-Champaign
mrodrigues.fernanda10 wrote:

Not sure of what your data looks like, and how you're analyzing it, but the plotPCA() function from the affycoretools R package may allow you to do that. You can also produce a 3d plot with this function.

ADD COMMENTlink written 19 months ago by mrodrigues.fernanda10
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