Question: Functions of DESeq2 package
0
gravatar for cirisarri95
3.5 years ago by
cirisarri950 wrote:

Hi all,

Regarding the package DESeq2,

-What are the input files? BAM/SAM files?

-Does it makes the counting and the differential expression analysis, or just the latter?

Thank you. Regards,

Carlos

ADD COMMENTlink modified 3.5 years ago by Steve Lianoglou12k • written 3.5 years ago by cirisarri950
Answer: Functions of DESeq2 package
0
gravatar for Steve Lianoglou
3.5 years ago by
Denali
Steve Lianoglou12k wrote:

You should read this RNA-seq workflow on f1000research, which describes how you get from raw reads to results.

To get you started, however, the DESeq2 workflow starts with the assumption that you already have a count matrix of read/fragment counts per gene for your samples of interest.

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by Steve Lianoglou12k
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