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bnembarekmarwa
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@bnembarekmarwa-10593
Last seen 8.0 years ago
Hi All, I have installed and loaded GOSemSim, tried the functions implemented in the package using the examples. All the functions work fine, except clusterSim() and geneSim(). it throws and error as below. Please, advise ...
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> geneSim("241", "251", ont="MF", organism="human", measure="Wang", combine="BMA")
Error in sqliteSendQuery(con, statement, bind.data) :
expired SQLiteConnection
> sessionInfo()
R version 3.2.4 Revised (2016-03-16 r70336)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252
[3] LC_MONETARY=French_France.1252 LC_NUMERIC=C
[5] LC_TIME=French_France.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] BiocInstaller_1.20.1 GO.db_3.2.2 org.Hs.eg.db_3.2.3
[4] AnnotationDbi_1.32.3 Biobase_2.30.0 Rcpp_0.12.4
[7] IRanges_2.4.8 S4Vectors_0.8.11 BiocGenerics_0.16.1
[10] GOSemSim_1.28.2 RSQLite_1.0.0 DBI_0.3.1
loaded via a namespace (and not attached):
[1] tools_3.2.4