Installation error GeneRFold and GeneR.
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Entering edit mode
vinod.acear ▴ 50
@vinodacear-8884
Last seen 11 months ago
India

Hi, I tried to install "GeneRfold" package, but there is an incompatibility is present between the version of R and package. It is also showing incompatibility of system in installing "GeneR" which is required package for "GeneRFold" (C: GeneR installation error)

Please suggest me any possible way to install these packages

 

> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.1), ?biocLite for help
> biocLite("GeneRfold")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.5 (2016-04-14).
Installing package(s) ‘GeneRfold’
Old packages: 'limma', 'Matrix', 'nlme', 'packrat', 'rJava', 'boot', 'MASS', 'spatial'
Update all/some/none? [a/s/n]: 
n
Warning message:
package ‘GeneRfold’ is not available (for R version 3.2.5) 

 

> sessionInfo()
R version 3.2.5 (2016-04-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.4 LTS

locale:
 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8        LC_COLLATE=en_IN.UTF-8    
 [5] LC_MONETARY=en_IN.UTF-8    LC_MESSAGES=en_IN.UTF-8    LC_PAPER=en_IN.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.20.1

loaded via a namespace (and not attached):
[1] tools_3.2.5
GeneRFold GeneR • 604 views
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Entering edit mode
@martin-morgan-1513
Last seen 14 days ago
United States

Note that geneRfold is in the same situation as geneR in your GeneR installation error -- no longer available -- so your options are the same as for geneR.

My advice is to find another package / solution to the problem you are trying to address.

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