Hello,

I am trying to follow this pipeline and I have problems preparing the gtf file.

I enter the following command:

python /Library/Frameworks/R.framework/Versions/3.2/Resources/library/DEXSeq/python_scripts/dexseq_prepare_annotation.py mm10.genes.gtf mm10.genes.gff

But it keeps giving me an empty gff file (no error message).

Does anyone know what can be the problem?

Thanks in advance,
Sakura