Question: how to convert emsembl identiers with ENTERz ID in a logfoldchange files generated by DESeq2 to be used for SPIA
0
gravatar for saamar.rajput
3.4 years ago by
saamar.rajput0 wrote:

I have a logfoldchange file generated using DESeq2 and I want to further used it for SPIA(pathways analysis). Spia requires 2 vectors to be passed as parameters "LogFoldChange" and "ENTERZ GENE ID". In my file I have ENSEMBL identifiers and logFoldChange. Either I have to add ENTERZ gene ID in an extra column to the corresponding EMSEMBL identifier or I can convert the EMSEMBL identifiers to ENTERZ gene ID. 

But I do not know how to do it. Can somebody help?

deseq2 runspia enterz • 520 views
ADD COMMENTlink modified 3.4 years ago by Michael Love25k • written 3.4 years ago by saamar.rajput0
Answer: how to convert emsembl identiers with ENTERz ID in a logfoldchange files genera
1
gravatar for Michael Love
3.4 years ago by
Michael Love25k
United States
Michael Love25k wrote:

See this section of the workflow:

http://master.bioconductor.org/help/workflows/rnaseqGene/#annotating-and-exporting-results

ADD COMMENTlink written 3.4 years ago by Michael Love25k

Thanks alot Michael :)

ADD REPLYlink written 3.4 years ago by saamar.rajput0
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