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Question: dupRadar parameter for single-end RNA-Seq data
0
gravatar for Gary
18 months ago by
Gary0
Gary0 wrote:

Hi,

I have single-end RNA-Seq data will be analyzed by dupRadar. However, I am not sure how to set the correct parameter based on the manual below. Should I set “paired <- FALSE” or “paired <- TRUE”? Many thanks.

paired   <- FALSE   # is paired end data

Best,

Gary

ADD COMMENTlink modified 12 months ago by sergisayolspuig40 • written 18 months ago by Gary0
1

I think that, if you have single-end data, you want to set paired <- FALSE

ADD REPLYlink written 18 months ago by Mike Smith2.1k
0
gravatar for sergisayolspuig
12 months ago by
Germany
sergisayolspuig40 wrote:

Hi Gary,

the accompanying comment is a misguided attempt to define what the parameter expects. Please ignore the comment (or add a question mark at the end), and proceed as the common sense suggests:

PAIRED <- TRUE  # the library is paired end

PAIRED <- FALSE # the library is single end

cheers,

Sergi

ADD COMMENTlink written 12 months ago by sergisayolspuig40
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