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Question: How to install old GenomicRanges 1.14.4 package ?
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gravatar for winter_li
18 months ago by
winter_li0
winter_li0 wrote:

HI ,

 I installed RAPIDR package, but It work with  R package GenomicRanges_1.14.4 , it took me long time to search on the internet, but I can not find any source to download this package. I used bioClite tool to download ,but 1.22 version will be installed , that version is not a package I want . 

 Can you provide a source to download ? thank you very much !

ADD COMMENTlink modified 17 months ago by derbecker10 • written 18 months ago by winter_li0
1
gravatar for derbecker
17 months ago by
derbecker10
derbecker10 wrote:

Take a look at "Materials: NEWS" at the cran page http://cran.r-project.org/web/packages/RAPIDR/index.html

"Modified the package such that it now depends on GenomicRanges 1.18.1. Specifically, the function summarizeOverlaps() has been moved from GenomicRanges to the GenomicAlignments package and the package dependencies have been modified correspondingly "

It seems it might work with the new versions now.

ADD COMMENTlink written 17 months ago by derbecker10

you are right ! thank you !

ADD REPLYlink written 17 months ago by winter_li0
0
gravatar for Mike Smith
18 months ago by
Mike Smith2.1k
EMBL Heidelberg / de.NBI
Mike Smith2.1k wrote:

If you really want to get hold of the old version, you can download the source tarball or compiled Windows version from here:

http://bioconductor.org/packages/2.13/bioc/html/GenomicRanges.html

However, you should note that it is really out of date now, there's no guarantee that it will work nicely with any up-to-date packages or R installation, and you shouldn't expect too much help if it starts throwing strange errors.  It would be nice to try and persuade the maintainer of the RAPIDR package to update their code to use the supported versions of the functions

ADD COMMENTlink modified 18 months ago • written 18 months ago by Mike Smith2.1k

thank you for your suggestions!

ADD REPLYlink written 17 months ago by winter_li0
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