How to install old GenomicRanges 1.14.4 package ?
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winter_li • 0
@winter_li-10657
Last seen 7.9 years ago

HI ,

 I installed RAPIDR package, but It work with  R package GenomicRanges_1.14.4 , it took me long time to search on the internet, but I can not find any source to download this package. I used bioClite tool to download ,but 1.22 version will be installed , that version is not a package I want . 

 Can you provide a source to download ? thank you very much !

bioconductor R cancer probe deseq2 • 2.0k views
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derbecker ▴ 10
@derbecker-10829
Last seen 7.9 years ago

Take a look at "Materials: NEWS" at the cran page http://cran.r-project.org/web/packages/RAPIDR/index.html

"Modified the package such that it now depends on GenomicRanges 1.18.1. Specifically, the function summarizeOverlaps() has been moved from GenomicRanges to the GenomicAlignments package and the package dependencies have been modified correspondingly "

It seems it might work with the new versions now.

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you are right ! thank you !

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Mike Smith ★ 6.5k
@mike-smith
Last seen 9 hours ago
EMBL Heidelberg

If you really want to get hold of the old version, you can download the source tarball or compiled Windows version from here:

http://bioconductor.org/packages/2.13/bioc/html/GenomicRanges.html

However, you should note that it is really out of date now, there's no guarantee that it will work nicely with any up-to-date packages or R installation, and you shouldn't expect too much help if it starts throwing strange errors.  It would be nice to try and persuade the maintainer of the RAPIDR package to update their code to use the supported versions of the functions

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thank you for your suggestions!

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