i was wondering, if it is possible to change the color coding in the DESeq2 plotMA function?
Since i cannot see how the function works, i don't know how to modify anything.
Additionally i would like to see how the plotMA works, which points to the same problem: I cannot see any code here. When i type the following, i can see a bit more code, but no possibility to change it.
function (object, ...)
.local <- function (object, alpha = 0.1, main = "", ylim,
res <- results(object, ...)
plotMA.DESeqResults(res, alpha = alpha, main = main,
ylim = ylim)
Thanks a lot, Alex