Question: Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
0
gravatar for Vinicius Henrique da Silva
3.2 years ago by
Brazil

There is a function to obtain a data-frame containing the SNP tag and the correspondent Minimum allele frequency (MAF) from Genomic Data Structure (GDS) file?

I tried to find a function in SNPRelate and GWASTools packages, but I did not find what I was looking for. I will be grateful for any light here.


 

gwastools snprelate • 659 views
ADD COMMENTlink modified 3.2 years ago by Adrienne Stilp30 • written 3.2 years ago by Vinicius Henrique da Silva40
Answer: Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
2
gravatar for James W. MacDonald
3.2 years ago by
United States
James W. MacDonald50k wrote:

Did you look at ?snpgdsSNPRateFreq in the SNPRelate package?

ADD COMMENTlink written 3.2 years ago by James W. MacDonald50k
Answer: Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
1
gravatar for Adrienne Stilp
3.2 years ago by
United States
Adrienne Stilp30 wrote:

You can use the alleleFrequency function in GWASTools for array data or the alleleFrequency function in SeqVarTools for sequencing data.

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by Adrienne Stilp30
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