permutation with plink
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sedrinne • 0
@sedrinne-10786
Last seen 7.8 years ago

Hello.

I'm working on data from illumina.

Now I'm doing permutation using plink with 36 core 60GB memory computers (linux).

I'm worried that if I used a wrong codes for this process.

I used "--mperm 10000 --set-max 10000 --noweb" for the permutation.

Was it correct?

And I wonder if the p value in the result file is less than 0.05 than it is significant or not.

Thank you in advance.

 

YB

illumina plink permutation • 1.1k views
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@james-w-macdonald-5106
Last seen 2 hours ago
United States

This isn't a general purpose bioinformatics forum, but is instead intended only for questions about Bioconductor packages (and plink is not part of Bioconductor). You will likely get better traction at www.biostars.org.

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I am so sorry.

Thank you for notifying me about this.

Best,

YB

 

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