I'm trying to use copywriteR for calculating copy number across samples genome. My problem is that the program seem to be running for a short period of time until it suddenly stop and quit to cmd command line.
After showing the message about my job would be ran on multiple cpu, there is no other warning or error message. The last lines of log file shows like follow:
INFO [2016-05-31 00:35:50] CopywriteR has finished filtering low-quality and anomalous reads in the following (unique) samples: