Constellation Map from the Broad?
0
0
Entering edit mode
Aedin Culhane ▴ 510
@aedin-culhane-1526
Last seen 2.0 years ago
United States

Hi

Just a quick question. I don't want to re-create a package if someone has one done already.  Has anyone tried or created an R package of the Broad's GSEA result visualization tool Constellation Map?   Had anyone tested this ok and run into problems?

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648224/

R code is available at  10.5281/zenodo.18586

Thanks

Aedin

gene set analysis • 658 views
ADD COMMENT
0
Entering edit mode

The Broad Institute never ported GSEA into an R package. It's doubtful that Constellation Map will ever be. The lack of R support is supposed to encourage users to do their work in GenePattern.

ADD REPLY
0
Entering edit mode

Hi

Thanks, I know the Broad didn't provide an R package, but they provided R scripts so I was wondering if anyone else had made a package.

Has anyone used  Constellation Map (even in GenePattern) and found it useful?

Aedin

ADD REPLY

Login before adding your answer.

Traffic: 438 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6