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Question: Constellation Map from the Broad?
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gravatar for Aedin Culhane
2.3 years ago by
Aedin Culhane510
United States
Aedin Culhane510 wrote:

Hi

Just a quick question. I don't want to re-create a package if someone has one done already.  Has anyone tried or created an R package of the Broad's GSEA result visualization tool Constellation Map?   Had anyone tested this ok and run into problems?

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648224/

R code is available at  10.5281/zenodo.18586

Thanks

Aedin

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by Aedin Culhane510

The Broad Institute never ported GSEA into an R package. It's doubtful that Constellation Map will ever be. The lack of R support is supposed to encourage users to do their work in GenePattern.

ADD REPLYlink written 2.3 years ago by Dario Strbenac1.4k

Hi

Thanks, I know the Broad didn't provide an R package, but they provided R scripts so I was wondering if anyone else had made a package.

Has anyone used  Constellation Map (even in GenePattern) and found it useful?

Aedin

ADD REPLYlink written 2.3 years ago by Aedin Culhane510
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