Question: Constellation Map from the Broad?
gravatar for Aedin Culhane
2.5 years ago by
Aedin Culhane510
United States
Aedin Culhane510 wrote:


Just a quick question. I don't want to re-create a package if someone has one done already.  Has anyone tried or created an R package of the Broad's GSEA result visualization tool Constellation Map?   Had anyone tested this ok and run into problems?

R code is available at  10.5281/zenodo.18586



ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by Aedin Culhane510

The Broad Institute never ported GSEA into an R package. It's doubtful that Constellation Map will ever be. The lack of R support is supposed to encourage users to do their work in GenePattern.

ADD REPLYlink written 2.5 years ago by Dario Strbenac1.4k


Thanks, I know the Broad didn't provide an R package, but they provided R scripts so I was wondering if anyone else had made a package.

Has anyone used  Constellation Map (even in GenePattern) and found it useful?


ADD REPLYlink written 2.5 years ago by Aedin Culhane510
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 339 users visited in the last hour