Constellation Map from the Broad?

0

Entering edit mode

Aedin Culhane ▴ 510

@aedin-culhane-1526

Last seen 4.6 years ago

United States

Hi

Just a quick question. I don't want to re-create a package if someone has one done already. Has anyone tried or created an R package of the Broad's GSEA result visualization tool Constellation Map? Had anyone tested this ok and run into problems?

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648224/

R code is available at 10.5281/zenodo.18586

Thanks

Aedin

gene set analysis • 1.1k views

ADD COMMENT • link 7.9 years ago Aedin Culhane ▴ 510

0

Entering edit mode

The Broad Institute never ported GSEA into an R package. It's doubtful that Constellation Map will ever be. The lack of R support is supposed to encourage users to do their work in GenePattern.

ADD REPLY • link 7.9 years ago Dario Strbenac ★ 1.5k

0

Entering edit mode

Hi

Thanks, I know the Broad didn't provide an R package, but they provided R scripts so I was wondering if anyone else had made a package.

Has anyone used Constellation Map (even in GenePattern) and found it useful?

Aedin

ADD REPLY • link 7.9 years ago Aedin Culhane ▴ 510

Login before adding your answer.