I am using limma to analyze a barcode sequencing dataset. The raw data are counts, similar to RNA-seq. I am using
edgeR::calcNormFactors followed by
voom to normalize and transform the count data. I am interested in plotting normalized data for a specific single gene. I have looked around and found
plotCounts function from DESeq2. Is there a similar function in limma? If not, is there another package that provides such a function for EList or ExpressionSet objects?