QC for Affymetrix Arrays
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@gaiusjaugustus-10041
Last seen 3.0 years ago
University of Arizona

I am currently using Aroma's ASCRMAv2 & Paired PSCBS to do a copy number analysis on Affymetrix GenomeWide SNP Array 6.0 data.  I've run the data through but haven't yet seen a measure of quality that will allow me to remove bad samples.

 

Using Affy's Genotyping Console, I can get MAPD values, but I wasn't sure if there were values (i.e. MAPD, waviness, etc) created and stored in Aroma processing that I can use.  If not, what do others use to identify bad samples?

 

Thanks in advance for any help,

Gaius

affymetrix affymetrix microarrays aroma • 592 views
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