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hibari.kyouya
•
0
@hibarikyouya-10935
Last seen 7.6 years ago
Hi all !
Hope everybody is ok, thanks for the guys who are active here :)
There might a problem with the TCGAdownload function at the moment.
Code that used to work before don't work anymore on my machine.
For example :
query <- TCGAquery(tumor="BRCA", level=3, platform="MDA_RPPA_Core")
TCGAdownload(query, path="rppa")
or :
TCGAdownload(query, path="rppa", samples=c("TCGA-E2-A14V-01A-21-A13E-20"))
gives me :
-=-=-=-=-=-= | Downloading:5 folders | Path:rppa -=-=-=-=-=-= | | 0% Downloading:mdanderson.org_BRCA.MDA_RPPA_Core.Level_3.1.3.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 240 100 240 0 0 40 0 0:00:06 0:00:05 0:00:01 54 100 2060 100 2060 0 0 343 0 0:00:06 0:00:05 0:00:01 343 Error in fread(paste0(root, data[i, "deployLocation"], ".md5"), header = F, : Expected sep (',') but new line or EOF ends field 1 on line 33 when reading data: --> De plus : Warning messages: 1: In fread(paste0(root, data[i, "deployLocation"], ".md5"), header = F, : Unable to find 5 lines with expected number of columns (+ middle) 2: In fread(paste0(root, data[i, "deployLocation"], ".md5"), header = F, : Unable to find 5 lines with expected number of columns (+ last)
Can somebody try to see if I'm dumb or it's not me.
Thanks :)