How to get dispersion values for DESeq2
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@hiraksarkarcs-9446
Last seen 6.3 years ago

Hi, 

I am trying to get direct dispersion estimates from DESeq2. As the results() does not contain the direct estimates, is there an way to get hold of the estimates ? I want plug in these estimates in my model, so dispersion plot won't work. 

Thanks 

deseq2 dispersion R • 890 views
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@mikelove
Last seen 21 hours ago
United States

Check in the vignette section "Access to all calculated values"

vignette("DESeq2")
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Thanks, Just to make sure are you referring to the section "Extracting transformed values" on page 23. 

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No I'm referring to Section 3.10 "Access to all calculated values" that starts on page 34.

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