LimmaGUI discards spots with no signal on one channel??
0
0
Entering edit mode
@jdelasherasedacuk-1189
Last seen 8.6 years ago
United Kingdom
I am a recent user of the LimmaGUI package. I searched the archives and couldn't find this issue raised, so I hope somebody can help. I'm finding that LimmaGUI works very well to look at what genes are differentially expressed, as long as they are expressed to some extent on both samples (channels). I am currently mainly interested in extremes of expression: looking at genes that are inactive in one sample, but active in the other, and I'm finding that LimmaGUI is disregarding all those genes that have no signal on one channel (no matter how strong the signal on the other)... so all the genes that I want are out of the list of differentially expressed genes. How could I get around this? Jose -- Dr. Jose I. de las Heras Email: J.delasHeras@ed.ac.uk The Wellcome Trust Centre for Cell Biology Phone: +44 (0)131 6513374 Institute for Cell & Molecular Biology Fax: +44 (0)131 6507360 Swann Building, Mayfield Road University of Edinburgh Edinburgh EH9 3JR UK
limmaGUI limmaGUI • 640 views
ADD COMMENT

Login before adding your answer.

Traffic: 533 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6