Entering edit mode
I am a recent user of the LimmaGUI package. I searched the archives
and couldn't
find this issue raised, so I hope somebody can help.
I'm finding that LimmaGUI works very well to look at what genes are
differentially expressed, as long as they are expressed to some extent
on both
samples (channels). I am currently mainly interested in extremes of
expression:
looking at genes that are inactive in one sample, but active in the
other, and
I'm finding that LimmaGUI is disregarding all those genes that have no
signal
on one channel (no matter how strong the signal on the other)... so
all the
genes that I want are out of the list of differentially expressed
genes.
How could I get around this?
Jose
--
Dr. Jose I. de las Heras Email:
J.delasHeras@ed.ac.uk
The Wellcome Trust Centre for Cell Biology Phone: +44 (0)131
6513374
Institute for Cell & Molecular Biology Fax: +44 (0)131
6507360
Swann Building, Mayfield Road
University of Edinburgh
Edinburgh EH9 3JR
UK