SNPs tool ???
1
0
Entering edit mode
@mayte-suarez-farinas-694
Last seen 9.6 years ago
Hi I would like to know if there is any tool to work with affy SNPs chips. I have looked in the mail archives and it appears that some people were interested in it, so if somebody has any piece of code to share with me I would very very much appreciate it. If not, if somebody has created the cdfenv for the 10K (v2) chip, could I use it to read the cel files trought Read.affy ? thanks in advance .. Mayte -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New York, NY 10021 phone: 1-212-327-8186 fax: 1-212-327-7422
affy affy • 678 views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 13 hours ago
United States
Mayte Suarez-Farinas wrote: > > Hi > I would like to know if there is any tool to work with affy SNPs chips. > I have looked in the mail archives and it appears that > some people were interested in it, so if > somebody has any piece of code to share with me > I would very very much appreciate it. > If not, if somebody has created the cdfenv for the > 10K (v2) chip, could I use it to read the cel files trought > Read.affy ? > thanks in advance .. There are no tools currently in BioC specifically designed for analyzing Affy SNP chips. However, there is a group of us that is actively working on designing a package to do so. As for building a cdfenv using the 10K chip, you can use the devel version of makecdfenv for this. > > Mayte -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
ADD COMMENT

Login before adding your answer.

Traffic: 773 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6