Question: SNPs tool ???
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gravatar for Mayte Suarez-Farinas
14.6 years ago by
Mayte Suarez-Farinas300 wrote:
Hi I would like to know if there is any tool to work with affy SNPs chips. I have looked in the mail archives and it appears that some people were interested in it, so if somebody has any piece of code to share with me I would very very much appreciate it. If not, if somebody has created the cdfenv for the 10K (v2) chip, could I use it to read the cel files trought Read.affy ? thanks in advance .. Mayte -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New York, NY 10021 phone: 1-212-327-8186 fax: 1-212-327-7422
affy • 461 views
ADD COMMENTlink modified 14.6 years ago by James W. MacDonald51k • written 14.6 years ago by Mayte Suarez-Farinas300
Answer: SNPs tool ???
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gravatar for James W. MacDonald
14.6 years ago by
United States
James W. MacDonald51k wrote:
Mayte Suarez-Farinas wrote: > > Hi > I would like to know if there is any tool to work with affy SNPs chips. > I have looked in the mail archives and it appears that > some people were interested in it, so if > somebody has any piece of code to share with me > I would very very much appreciate it. > If not, if somebody has created the cdfenv for the > 10K (v2) chip, could I use it to read the cel files trought > Read.affy ? > thanks in advance .. There are no tools currently in BioC specifically designed for analyzing Affy SNP chips. However, there is a group of us that is actively working on designing a package to do so. As for building a cdfenv using the 10K chip, you can use the devel version of makecdfenv for this. > > Mayte -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623
ADD COMMENTlink written 14.6 years ago by James W. MacDonald51k
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