You have specified this correctly but this case of using ChIPQCreport with
a one sample experiment is not being correctly handled.
I will need to check in a new version and let you know to update the ChIPQC
package for a proper fix.
In the meantime, since this a one sample experiment, you could use
ChIPQCreport on a ChIPQCsample object instead.
Using the example data in package
># Get a list of ChIPQCsample objects from a ChIPQCexperiment
> tamoxifenSampleList <- QCsample(tamoxifen)
> sampleOfInterest <- tamoxifenSampleList[]
I'll let you know when new release is available.
On Wed, Jul 6, 2016 at 7:11 PM, Coby Viner [bioc] <firstname.lastname@example.org>
> Activity on a post you are following on support.bioconductor.org
> User Coby Viner <https: support.bioconductor.org="" u="" 10939=""/> wrote Question:
> ChIPQC for a single sample (disabling facets)
> <https: support.bioconductor.org="" p="" 84754=""/>:
> Using the same commands, and session information as C: ChIPQC without
> peak calls <https: support.bioconductor.org="" p="" 84072="" #84153="">, I encounter
> the below error upon attempting to run: ChIPQCreport(experiment, facet=F)
> Saving 7 x 7 in image
> Error: Faceting variables must have at least one value
> Execution halted
> How do I correctly disable faceting? I only have a single sample in this
> case, so there is nothing to facet over. Would it be possible for ChIPQC to
> automatically detect this case?
> Post tags: ChipQc, chipqc
> You may reply via email or visit ChIPQC for a single sample (disabling facets)