metagenomeSeq for continuous phenotype
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pjgalli2 • 0
@pjgalli2-11068
Last seen 5.3 years ago

Hello.  I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error:

Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : 
  var is empty

Is there a way to use metagenomeSeq for a continuous phenotype?  Thank you.

metagenomeseq continuous limma • 751 views
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@joseph-nathaniel-paulson-6442
Last seen 4.6 years ago
United States
Hi, Thanks - I'll write an update to fix this. Can you please post on the github tracker? Thanks! On 2016-07-11 09:34, pjgalli2 [bioc] wrote: > Activity on a post you are following on support.bioconductor.org [1] > > User pjgalli2 [2] wrote Question: metagenomeSeq for continuous phenotype [3]: > > Hello. I am trying to run the fitFeatureModel function in metagenomeSeq for a continuous phenotype, but I receive this error: > > Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : > var is empty > > Is there a way to use metagenomeSeq for a continuous phenotype? Thank you. > ------------------------- > > Post tags: metagenomeseq, continuous, limma > > You may reply via email or visit metagenomeSeq for continuous phenotype Links: ------ [1] https://support.bioconductor.org [2] pjgalli2 [3] metagenomeSeq for continuous phenotype
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pjgalli2 • 0
@pjgalli2-11068
Last seen 5.3 years ago

Just posted it here:

https://github.com/HCBravoLab/metagenomeSeq/issues/36

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