Question: Analyzing a continuous phenotype using DESeq2
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gravatar for pjgalli2
3.3 years ago by
pjgalli20
pjgalli20 wrote:

Hello.  Is it possible to analyze a continuous phenotype with DESeq2, without grouping into factors?  I receive this note when I run the default DESeq function:

-- note: fitType='parametric', but the dispersion trend was not well captured by the
   function: y = a/x + b, and a local regression fit was automatically substituted.
   specify fitType='local' or 'mean' to avoid this message next time.

 

deseq2 continuous • 465 views
ADD COMMENTlink written 3.3 years ago by pjgalli20

Nevermind.  I had the phenotype coded as factors instead of numeric.  Looks like it's working.

ADD REPLYlink written 3.3 years ago by pjgalli20
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