Question: Analyzing a continuous phenotype using DESeq2
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pjgalli2 • 0 wrote:
Hello. Is it possible to analyze a continuous phenotype with DESeq2, without grouping into factors? I receive this note when I run the default DESeq function:
-- note: fitType='parametric', but the dispersion trend was not well captured by the function: y = a/x + b, and a local regression fit was automatically substituted. specify fitType='local' or 'mean' to avoid this message next time.
Nevermind. I had the phenotype coded as factors instead of numeric. Looks like it's working.