displaying network from microbial count data
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@chrisclarkson100-11114
Last seen 4 months ago
United Kingdom

I have an abundance table of taxa (columns) and communities (rows).

  community acanthamoeba acetitomaculum acetivibrio acholeplasma achromobacter
1      AE01            0              0           0            0             1
2      AE02            0              0           0            0             2
3      AE03            0              0           0            0            48
4      AE04            0              0           0            0             1
5      AE05            0              0           0            0           539
6      AE06            0              0           0            0           188

Is there a way that I can translate that I can interpret it in phyloseq with a command such as 'plot_net'? Or can anyone recommend another means of doing this?

phyloseq • 635 views